IL_4V83_009

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCCC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_009 not in the Motif Atlas

Geometric match to IL_7Q80_003

Geometric discrepancy: 0.2108

The information below is about IL_7Q80_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

4V83|1|AA|C|136
4V83|1|AA|C|136|||A
4V83|1|AA|C|136|||B
4V83|1|AA|C|137
*
4V83|1|AA|G|226
4V83|1|AA|G|227

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AU

30S ribosomal protein Thx