IL_4V83_180

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_180 not in the Motif Atlas

Geometric match to IL_4LFB_008

Geometric discrepancy: 0.0962

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4V83|1|CA|C|132
4V83|1|CA|U|133
4V83|1|CA|A|134
4V83|1|CA|C|135
4V83|1|CA|C|136
*
4V83|1|CA|G|227
4V83|1|CA|A|228
4V83|1|CA|U|229
4V83|1|CA|G|230

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20