IL_4V83_187

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

4V83|1|CA|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_187 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.1177

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

4V83|1|CA|U|367
4V83|1|CA|U|368
4V83|1|CA|C|369
*
4V83|1|CA|G|392
4V83|1|CA|A|393

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CP

30S ribosomal protein S16