IL_4V83_190

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4V83|1|CA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_190 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1258

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V83|1|CA|G|409
4V83|1|CA|G|410
4V83|1|CA|A|411
4V83|1|CA|A|412
4V83|1|CA|G|413
4V83|1|CA|A|414
4V83|1|CA|A|415
4V83|1|CA|G|416
*
4V83|1|CA|U|427
4V83|1|CA|G|428
4V83|1|CA|U|429
4V83|1|CA|A|430
4V83|1|CA|A|431
4V83|1|CA|A|432
4V83|1|CA|C|433

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CD

30S ribosomal protein S4