IL_4V83_224

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_224 not in the Motif Atlas

Geometric match to IL_4ZNP_002

Geometric discrepancy: 0.3214

The information below is about IL_4ZNP_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

4V83|1|CA|C|1259
4V83|1|CA|C|1260
4V83|1|CA|A|1261
4V83|1|CA|C|1262
*
4V83|1|CA|G|1273
4V83|1|CA|G|1274
4V83|1|CA|A|1275
4V83|1|CA|G|1276

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CU

30S ribosomal protein Thx