IL_4V83_258
3D structure
- PDB id
- 4V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 4V83|1|DA|G|801, 4V83|1|DA|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V83_258 not in the Motif Atlas
- Geometric match to IL_4WF9_021
- Geometric discrepancy: 0.0721
- The information below is about IL_4WF9_021
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V83|1|DA|G|674
4V83|1|DA|A|675
4V83|1|DA|A|676
4V83|1|DA|A|677
4V83|1|DA|C|678
*
4V83|1|DA|G|799
4V83|1|DA|A|800
4V83|1|DA|G|801
4V83|1|DA|A|802
4V83|1|DA|U|803
4V83|1|DA|A|804
4V83|1|DA|G|805
4V83|1|DA|C|806
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain DE
- 50S ribosomal protein L4
- Chain DL
- 50S ribosomal protein L15
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