IL_4V83_334

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CU*AUAG*G

Length

7 nucleotides

Bulged bases

4V83|1|DA|U|2712, 4V83|1|DA|A|2713

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_334 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.1829

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

4V83|1|DA|C|2695
4V83|1|DA|U|2696
*
4V83|1|DA|A|2711
4V83|1|DA|U|2712
4V83|1|DA|A|2713
4V83|1|DA|G|2714
*
4V83|1|DA|G|2714

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DN

50S ribosomal protein L17

Chain DP

50S ribosomal protein L19