IL_4V83_363

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4V83|1|DA|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_363 not in the Motif Atlas

Homologous match to IL_9DFE_062

Geometric discrepancy: 0.3514

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V83|1|DA|G|1526
4V83|1|DA|G|1527
4V83|1|DA|A|1528
4V83|1|DA|A|1529
4V83|1|DA|G|1530
*
4V83|1|DA|U|1541
4V83|1|DA|G|1542
4V83|1|DA|A|1543
4V83|1|DA|C|1544
4V83|1|DA|A|1545
4V83|1|DA|A|1546
4V83|1|DA|C|154|||B

Current chains

Chain DA

23S ribosomal RNA

Nearby chains