IL_4V84_005

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_005 not in the Motif Atlas

Homologous match to IL_5J7L_004

Geometric discrepancy: 0.1333

The information below is about IL_5J7L_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

4V84|1|AA|C|54
4V84|1|AA|A|55
4V84|1|AA|U|56
*
4V84|1|AA|A|356
4V84|1|AA|G|357

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AT

30S ribosomal protein S20

Chain DH

50S ribosomal protein L9