IL_4V84_016

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_016 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1281

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4V84|1|AA|G|292
4V84|1|AA|G|293
*
4V84|1|AA|U|304
4V84|1|AA|G|305
4V84|1|AA|G|306
4V84|1|AA|C|307
4V84|1|AA|C|308

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16