IL_4V84_018

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGGAAGAAG*UGUAAACU

Length

17 nucleotides

Bulged bases

4V84|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|AA|A|408
4V84|1|AA|G|409
4V84|1|AA|G|410
4V84|1|AA|A|411
4V84|1|AA|A|412
4V84|1|AA|G|413
4V84|1|AA|A|414
4V84|1|AA|A|415
4V84|1|AA|G|416
*
4V84|1|AA|U|427
4V84|1|AA|G|428
4V84|1|AA|U|429
4V84|1|AA|A|430
4V84|1|AA|A|431
4V84|1|AA|A|432
4V84|1|AA|C|433
4V84|1|AA|U|434

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain DA

Large subunit ribosomal RNA; LSU rRNA