IL_4V84_020

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_020 not in the Motif Atlas

Geometric match to IL_6CZR_131

Geometric discrepancy: 0.1831

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V84|1|AA|G|450
4V84|1|AA|A|451
4V84|1|AA|A|452
4V84|1|AA|A|453
4V84|1|AA|C|454
4V84|1|AA|C|455
4V84|1|AA|C|456
*
4V84|1|AA|G|476
4V84|1|AA|G|477
4V84|1|AA|A|478
4V84|1|AA|C|479
4V84|1|AA|U|480
4V84|1|AA|G|481
4V84|1|AA|A|482
4V84|1|AA|C|483

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AP

30S ribosomal protein S16

Chain DH

50S ribosomal protein L9