IL_4V84_028

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_028 not in the Motif Atlas

Homologous match to IL_4LFB_027

Geometric discrepancy: 0.1132

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4V84|1|AA|G|654
4V84|1|AA|A|655
*
4V84|1|AA|U|751
4V84|1|AA|G|752
4V84|1|AA|A|753
4V84|1|AA|C|754

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AO

30S ribosomal protein S15