IL_4V84_040

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_040 not in the Motif Atlas

Geometric match to IL_1YZ9_001

Geometric discrepancy: 0.1768

The information below is about IL_1YZ9_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V84|1|AA|A|949
4V84|1|AA|U|950
4V84|1|AA|G|951
*
4V84|1|AA|C|1230
4V84|1|AA|G|1231
4V84|1|AA|U|1232

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AM

30S ribosomal protein S13

Chain AV

RNA (34-MER)