IL_4V84_042

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_042 not in the Motif Atlas

Geometric match to IL_4LFB_039

Geometric discrepancy: 0.1745

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V84|1|AA|G|993
4V84|1|AA|A|994
4V84|1|AA|C|995
4V84|1|AA|A|996
4V84|1|AA|U|997
*
4V84|1|AA|A|1044
4V84|1|AA|C|1045

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AN

30S ribosomal protein S14 type Z