IL_4V84_047

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGCAUG*CAUG

Length

10 nucleotides

Bulged bases

4V84|1|AA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_047 not in the Motif Atlas

Geometric match to IL_6CZR_365

Geometric discrepancy: 0.2307

The information below is about IL_6CZR_365

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45699.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V84|1|AA|U|1052
4V84|1|AA|G|1053
4V84|1|AA|C|1054
4V84|1|AA|A|1055
4V84|1|AA|U|1056
4V84|1|AA|G|1057
*
4V84|1|AA|C|1203
4V84|1|AA|A|1204
4V84|1|AA|U|1205
4V84|1|AA|G|1206

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14 type Z