IL_4V84_053

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAGCG*CGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_053 not in the Motif Atlas

Geometric match to IL_8VTW_072

Geometric discrepancy: 0.3836

The information below is about IL_8VTW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V84|1|AA|C|1128
4V84|1|AA|C|1129
4V84|1|AA|A|1130
4V84|1|AA|G|1131
4V84|1|AA|C|1132
4V84|1|AA|G|1133
*
4V84|1|AA|C|1141
4V84|1|AA|G|1142
4V84|1|AA|G|1143

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AI

30S ribosomal protein S9