IL_4V84_054

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_054 not in the Motif Atlas

Homologous match to IL_5J7L_053

Geometric discrepancy: 0.179

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V84|1|AA|C|1158
4V84|1|AA|U|1159
4V84|1|AA|G|1160
4V84|1|AA|C|1161
*
4V84|1|AA|G|1175
4V84|1|AA|A|1176
4V84|1|AA|G|1177
4V84|1|AA|G|1178
4V84|1|AA|A|1179
4V84|1|AA|A|1180
4V84|1|AA|G|1181

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AI

30S ribosomal protein S9