IL_4V84_082

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_082 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0708

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V84|1|BA|U|239
4V84|1|BA|G|240
4V84|1|BA|A|241
4V84|1|BA|G|242
4V84|1|BA|U|243
4V84|1|BA|A|244
4V84|1|BA|G|245
*
4V84|1|BA|C|253
4V84|1|BA|G|254
4V84|1|BA|A|255
4V84|1|BA|A|256
4V84|1|BA|A|257
4V84|1|BA|G|258

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15