IL_4V84_120

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

4V84|1|BA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|BA|C|1043
4V84|1|BA|G|1044
4V84|1|BA|A|1045
4V84|1|BA|A|1046
4V84|1|BA|G|1047
4V84|1|BA|A|1048
4V84|1|BA|C|1049
4V84|1|BA|A|1050
4V84|1|BA|G|1051
4V84|1|BA|C|1052
4V84|1|BA|C|1053
*
4V84|1|BA|G|1106
4V84|1|BA|G|1107
4V84|1|BA|U|1108
4V84|1|BA|C|1109
4V84|1|BA|G|1110
4V84|1|BA|A|1111
4V84|1|BA|G|1112

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L6

Chain BI

50S ribosomal protein L10