IL_4V84_125

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_125 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2179

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

4V84|1|BA|C|1221
4V84|1|BA|C|1222
*
4V84|1|BA|G|1227
4V84|1|BA|G|1228
4V84|1|BA|G|1229

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21