IL_4V84_178

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CU*AUAG*G

Length

7 nucleotides

Bulged bases

4V84|1|BA|U|2712, 4V84|1|BA|A|2713

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_178 not in the Motif Atlas

Geometric match to IL_5TBW_119

Geometric discrepancy: 0.1969

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V84|1|BA|C|2695
4V84|1|BA|U|2696
*
4V84|1|BA|A|2711
4V84|1|BA|U|2712
4V84|1|BA|A|2713
4V84|1|BA|G|2714
*
4V84|1|BA|G|2714

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L17

Chain BP

50S ribosomal protein L19