IL_4V84_179

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V84|1|BA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_179 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0844

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V84|1|BA|G|2737
4V84|1|BA|A|2738
4V84|1|BA|U|2739
4V84|1|BA|A|2740
4V84|1|BA|A|2741
4V84|1|BA|C|2742
*
4V84|1|BA|G|2762
4V84|1|BA|G|2763
4V84|1|BA|A|2764
4V84|1|BA|A|2765
4V84|1|BA|G|2766
4V84|1|BA|C|2767

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L13