IL_4V84_186

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUCCC*GAACAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_186 not in the Motif Atlas

Homologous match to IL_7A0S_105

Geometric discrepancy: 0.3939

The information below is about IL_7A0S_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

4V84|1|BB|G|33
4V84|1|BB|U|34
4V84|1|BB|U|35
4V84|1|BB|C|36
4V84|1|BB|C|37
4V84|1|BB|C|38
*
4V84|1|BB|G|44
4V84|1|BB|A|45
4V84|1|BB|A|46
4V84|1|BB|C|47
4V84|1|BB|A|48
4V84|1|BB|C|49

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5

Chain BO

50S ribosomal protein L18