IL_4V84_208

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_208 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1532

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V84|1|CA|G|446
4V84|1|CA|G|447
4V84|1|CA|A|448
4V84|1|CA|C|449
4V84|1|CA|G|450
*
4V84|1|CA|C|483
4V84|1|CA|G|484
4V84|1|CA|G|485
4V84|1|CA|U|486
4V84|1|CA|A|487
4V84|1|CA|C|488

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CP

30S ribosomal protein S16