3D structure

PDB id
4V84 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CUAG*CUAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary: CUAG,CUAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V84_233 not in the Motif Atlas
Geometric match to IL_4WF9_109
Geometric discrepancy: 0.309
The information below is about IL_4WF9_109
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_30621.4
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
66

Unit IDs

4V84|1|CA|C|998|||B
4V84|1|CA|U|999
4V84|1|CA|A|1000
4V84|1|CA|G|1001
*
4V84|1|CA|C|1039
4V84|1|CA|U|1040
4V84|1|CA|A|1041
4V84|1|CA|G|1042

Current chains

Chain CA
ribosomal RNA 16S

Nearby chains

No other chains within 10Å

Coloring options:


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