IL_4V84_233
3D structure
- PDB id
- 4V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUAG*CUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CUAG,CUAG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V84_233 not in the Motif Atlas
- Geometric match to IL_4WF9_109
- Geometric discrepancy: 0.309
- The information below is about IL_4WF9_109
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
4V84|1|CA|C|998|||B
4V84|1|CA|U|999
4V84|1|CA|A|1000
4V84|1|CA|G|1001
*
4V84|1|CA|C|1039
4V84|1|CA|U|1040
4V84|1|CA|A|1041
4V84|1|CA|G|1042
Current chains
- Chain CA
- ribosomal RNA 16S
Nearby chains
No other chains within 10ÅColoring options: