IL_4V84_240

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGUUG*CACUCU

Length

11 nucleotides

Bulged bases

4V84|1|CA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|CA|A|1123
4V84|1|CA|G|1124
4V84|1|CA|U|1125
4V84|1|CA|U|1126
4V84|1|CA|G|1127
*
4V84|1|CA|C|1145
4V84|1|CA|A|1146
4V84|1|CA|C|1147
4V84|1|CA|U|1148
4V84|1|CA|C|1149
4V84|1|CA|U|1150

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10