IL_4V84_248

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUC,GAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_248 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.2213

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V84|1|CA|G|1312
4V84|1|CA|U|1313
4V84|1|CA|C|1314
*
4V84|1|CA|G|1323
4V84|1|CA|A|1324
4V84|1|CA|C|1325

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CS

30S ribosomal protein S19

Chain CU

30S ribosomal protein Thx