IL_4V84_254

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_254 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.1018

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V84|1|CA|G|1416
4V84|1|CA|G|1417
4V84|1|CA|A|1418
4V84|1|CA|G|1419
*
4V84|1|CA|U|1481
4V84|1|CA|G|1482
4V84|1|CA|A|1483
4V84|1|CA|C|1484

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA