IL_4V84_255

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_255 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.1209

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4V84|1|CA|C|1431
4V84|1|CA|G|1432
4V84|1|CA|A|1433
4V84|1|CA|A|1434
4V84|1|CA|G|1435
*
4V84|1|CA|C|1466
4V84|1|CA|G|1467
4V84|1|CA|A|1468
4V84|1|CA|G|1469

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CT

30S ribosomal protein S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DP

50S ribosomal protein L19