IL_4V84_260

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAU*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62295.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

400

Unit IDs

4V84|1|CV|G|6183
4V84|1|CV|A|6184
4V84|1|CV|U|6185
*
4V84|1|CV|G|6192
4V84|1|CV|U|6193
4V84|1|CV|C|6194

Current chains

Chain CV

RNA (34-MER)

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13