IL_4V84_261
3D structure
- PDB id
- 4V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V84_261 not in the Motif Atlas
- Homologous match to IL_7RQB_001
- Geometric discrepancy: 0.0542
- The information below is about IL_7RQB_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.6
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V84|1|DA|G|24
4V84|1|DA|U|25
4V84|1|DA|G|26
4V84|1|DA|G|27
4V84|1|DA|A|28
4V84|1|DA|U|29
4V84|1|DA|G|30
*
4V84|1|DA|C|510
4V84|1|DA|U|511
4V84|1|DA|G|512
4V84|1|DA|A|513
4V84|1|DA|A|514
4V84|1|DA|A|515
4V84|1|DA|C|516
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D2
- 50S ribosomal protein L32
- Chain DQ
- 50S ribosomal protein L20
- Chain DS
- 50S ribosomal protein L22
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