IL_4V84_305

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4V84|1|DA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_305 not in the Motif Atlas

Geometric match to IL_7RQB_038

Geometric discrepancy: 0.1066

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

4V84|1|DA|G|1011
4V84|1|DA|U|1012
4V84|1|DA|C|1013
*
4V84|1|DA|G|1149
4V84|1|DA|C|1150

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20