IL_4V84_343

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

4V84|1|DA|C|2055, 4V84|1|DA|C|2612, 4V84|1|DA|U|2613, 4V84|1|DA|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_343 not in the Motif Atlas

Homologous match to IL_9DFE_079

Geometric discrepancy: 0.0862

The information below is about IL_9DFE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V84|1|DA|A|2054
4V84|1|DA|C|2055
4V84|1|DA|G|2056
4V84|1|DA|A|2057
*
4V84|1|DA|U|2611
4V84|1|DA|C|2612
4V84|1|DA|U|2613
4V84|1|DA|A|2614
4V84|1|DA|U|2615

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DS

50S ribosomal protein L22