IL_4V84_372

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V84|1|DB|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_372 not in the Motif Atlas

Homologous match to IL_4V9F_101

Geometric discrepancy: 0.1445

The information below is about IL_4V9F_101

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4V84|1|DB|C|17
4V84|1|DB|G|18
*
4V84|1|DB|C|65
4V84|1|DB|A|66
4V84|1|DB|G|67

Current chains

Chain DB

5S ribosomal RNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DV

50S ribosomal protein L25