IL_4V84_381

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCCGC*GUGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_381 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3114

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V84|1|AA|C|186|||A
4V84|1|AA|C|186|||B
4V84|1|AA|C|186|||C
4V84|1|AA|G|186|||D
4V84|1|AA|C|186|||E
*
4V84|1|AA|G|191|||C
4V84|1|AA|U|191|||D
4V84|1|AA|G|191|||E
4V84|1|AA|U|191|||F
4V84|1|AA|G|191|||G

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AT

30S ribosomal protein S20