IL_4V84_387

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUGCCAC*GGAGCUAAUC

Length

18 nucleotides

Bulged bases

4V84|1|AA|U|1257, 4V84|1|AA|U|1278, 4V84|1|AA|A|1280, 4V84|1|AA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|AA|G|1255
4V84|1|AA|A|1256
4V84|1|AA|U|1257
4V84|1|AA|G|1258
4V84|1|AA|C|1259
4V84|1|AA|C|1260
4V84|1|AA|A|1261
4V84|1|AA|C|1262
*
4V84|1|AA|G|1273
4V84|1|AA|G|1274
4V84|1|AA|A|1275
4V84|1|AA|G|1276
4V84|1|AA|C|1277
4V84|1|AA|U|1278
4V84|1|AA|A|1279
4V84|1|AA|A|1280
4V84|1|AA|U|1281
4V84|1|AA|C|1282

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14 type Z

Chain AU

30S ribosomal protein Thx