IL_4V84_393

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_393 not in the Motif Atlas

Homologous match to IL_9DFE_089

Geometric discrepancy: 0.0872

The information below is about IL_9DFE_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V84|1|BA|C|2350
4V84|1|BA|G|2351
4V84|1|BA|A|2352
4V84|1|BA|G|2353
*
4V84|1|BA|C|2364
4V84|1|BA|G|2365
4V84|1|BA|A|2366
4V84|1|BA|G|2367

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L33

Chain B5

50S ribosomal protein L35

Chain BW

50S ribosomal protein L27