IL_4V84_394

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGUAAGC*GUUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|BA|U|2847
4V84|1|BA|G|2848
4V84|1|BA|U|2849
4V84|1|BA|A|2850
4V84|1|BA|A|2851
4V84|1|BA|G|2852
4V84|1|BA|C|2853
*
4V84|1|BA|G|2864
4V84|1|BA|U|2865
4V84|1|BA|U|2866
4V84|1|BA|G|2867
4V84|1|BA|A|2868
4V84|1|BA|G|2869

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BN

50S ribosomal protein L17

Chain BP

50S ribosomal protein L19