IL_4V84_400

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGC*GUCAGC

Length

9 nucleotides

Bulged bases

4V84|1|CA|C|1200, 4V84|1|CA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|CA|G|1057
4V84|1|CA|G|1058
4V84|1|CA|C|1059
*
4V84|1|CA|G|1198
4V84|1|CA|U|1199
4V84|1|CA|C|1200
4V84|1|CA|A|1201
4V84|1|CA|G|1202
4V84|1|CA|C|1203

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14 type Z