IL_4V84_434

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_434 not in the Motif Atlas

Geometric match to IL_4V84_420

Geometric discrepancy: 0.0041

The information below is about IL_4V84_420

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_10569.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V84|1|CV|C|6181
4V84|1|CV|A|6182
4V84|1|CV|G|6183
*
4V84|1|CV|C|6194
4V84|1|CV|G|6195

Current chains

Chain CV

RNA (34-MER)

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13