IL_4V85_023

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V85_023 not in the Motif Atlas

Geometric match to IL_4LFB_017

Geometric discrepancy: 0.1674

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V85|1|AA|U|409
4V85|1|AA|G|410
4V85|1|AA|A|411
4V85|1|AA|A|412
4V85|1|AA|G|413
4V85|1|AA|A|414
4V85|1|AA|A|415
4V85|1|AA|G|416
*
4V85|1|AA|U|427
4V85|1|AA|G|428
4V85|1|AA|U|429
4V85|1|AA|A|430
4V85|1|AA|A|431
4V85|1|AA|A|432
4V85|1|AA|G|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4