3D structure

PDB id
4V85 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AAG*CU
Length
5 nucleotides
Bulged bases
4V85|1|AA|A|461
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V85_028 not in the Motif Atlas
Geometric match to IL_5J7L_312
Geometric discrepancy: 0.2166
The information below is about IL_5J7L_312
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
132

Unit IDs

4V85|1|AA|A|460
4V85|1|AA|A|461
4V85|1|AA|G|462
*
4V85|1|AA|C|470
4V85|1|AA|U|471

Current chains

Chain AA
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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