IL_4V85_034

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V85_034 not in the Motif Atlas

Geometric match to IL_6DME_002

Geometric discrepancy: 0.3629

The information below is about IL_6DME_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_44025.1

Basepair signature

cWW-cWW-tHS-cSH-cSH-cWW

Number of instances in this motif group

3

Unit IDs

4V85|1|AA|G|597
4V85|1|AA|U|598
4V85|1|AA|C|599
*
4V85|1|AA|G|639
4V85|1|AA|A|640
4V85|1|AA|U|641
4V85|1|AA|A|642
4V85|1|AA|C|643

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AQ

30S ribosomal protein S17