3D structure

PDB id
4V85 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUAAG*CGUUAUAAC
Length
14 nucleotides
Bulged bases
4V85|1|BA|U|102
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V85_074 not in the Motif Atlas
Homologous match to IL_5J7L_248
Geometric discrepancy: 0.2449
The information below is about IL_5J7L_248
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_37015.1
Basepair signature
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
Number of instances in this motif group
1

Unit IDs

4V85|1|BA|G|81
4V85|1|BA|U|82
4V85|1|BA|A|83
4V85|1|BA|A|84
4V85|1|BA|G|85
*
4V85|1|BA|C|97
4V85|1|BA|G|98
4V85|1|BA|U|99
4V85|1|BA|U|100
4V85|1|BA|A|101
4V85|1|BA|U|102
4V85|1|BA|A|103
4V85|1|BA|A|104
4V85|1|BA|C|105

Current chains

Chain BA
23S rRNA

Nearby chains

Chain B2
50S ribosomal protein L29
Chain BY
50S ribosomal protein L24 1

Coloring options:


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