IL_4V85_091

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V85_091 not in the Motif Atlas

Homologous match to IL_4WF9_026

Geometric discrepancy: 0.1139

The information below is about IL_4WF9_026

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

4V85|1|BA|G|738
4V85|1|BA|A|739
4V85|1|BA|C|740
*
4V85|1|BA|G|757
4V85|1|BA|C|758

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein L34