IL_4V85_175

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V85_175 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.1096

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

4V85|1|BA|C|2806
4V85|1|BA|U|2807
4V85|1|BA|G|2808
4V85|1|BA|A|2809
4V85|1|BA|A|2810
4V85|1|BA|G|2811
*
4V85|1|BA|C|2889
4V85|1|BA|G|2890
4V85|1|BA|U|2891
4V85|1|BA|G|2892

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BW

50S ribosomal protein L22