IL_4V87_007

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V87_007 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0409

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V87|1|AA|U|239
4V87|1|AA|G|240
4V87|1|AA|A|241
4V87|1|AA|G|242
4V87|1|AA|U|243
4V87|1|AA|A|244
4V87|1|AA|G|245
*
4V87|1|AA|C|253
4V87|1|AA|G|254
4V87|1|AA|A|255
4V87|1|AA|A|256
4V87|1|AA|A|257
4V87|1|AA|G|258

Current chains

Chain AA

RNA (2909-MER)

Nearby chains

Chain A8

50S ribosomal protein L35

Chain AO

50S ribosomal protein L15