IL_4V87_112

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V87|1|AB|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V87_112 not in the Motif Atlas

Homologous match to IL_4WF9_112

Geometric discrepancy: 0.1268

The information below is about IL_4WF9_112

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

4V87|1|AB|C|17
4V87|1|AB|G|18
*
4V87|1|AB|C|65
4V87|1|AB|A|66
4V87|1|AB|G|67

Current chains

Chain AB

5S RIBOSOMAL RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AQ

50S ribosomal protein L18

Chain AV

50S ribosomal protein L25