IL_4V87_184

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUA,UAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V87_184 not in the Motif Atlas

Geometric match to IL_1YZ9_002

Geometric discrepancy: 0.1742

The information below is about IL_1YZ9_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4V87|1|BB|C|28
4V87|1|BB|U|29
4V87|1|BB|A|30
*
4V87|1|BB|U|42
4V87|1|BB|A|43
4V87|1|BB|G|44

Current chains

Chain BB

TRNA-LEU

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA